ENSMUSG00000000440: Peroxisome proliferator-activated receptor gamma (Mus musculus)

PPAR-gamma, Nuclear receptor subfamily 1 group C member 3

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Number of protein-coding transcripts corresponding to the submitted sequence identifier: 1
Representative transcript (= transcript with the highest number of ATTTA motifs): ENSMUST00000000450
Total number of distinct positions containing the selected motif ATTTA: 4
Regulation of this mRNA by the RNA-binding proteins TTP, HuR or AUF1 (click here to hide corresponding literature):

Transcript ENSMUST00000000450 (representative transcript)

Length 3' UTR: 206 nt
A+T content in 3' UTR: 0.73
RNAplfold output: [ opening energies | probabilities of being unpaired ] (whole transcript)
Download/Linkout:[ download as annotated Genbank file | Linkout to ]
ATTTA: 3.20 fold-enrichment
Site 1647-1651:ATTTA (ATTTA)  
Opening energy for the core AUUUA pentamer: 0.51 kcal/mol (short range) / 0.55 kcal/mol (mid range)
Probability of being unpaired for the core AUUUA pentamer: 0.44 (short range) / 0.41 (mid range)
[ Highlight | show accessibility plot | show sequence logo | show alignment ]
Site 1664-1668:ATTTA (ATTTA)  
Opening energy for the core AUUUA pentamer: 0.95 kcal/mol (short range) / 0.93 kcal/mol (mid range)
Probability of being unpaired for the core AUUUA pentamer: 0.21 (short range) / 0.22 (mid range)
[ Highlight | show accessibility plot | show sequence logo | show alignment ]
Site 1724-1728:ATTTA (ATTTA)  
Opening energy for the core AUUUA pentamer: 0.85 kcal/mol (short range) / 1.22 kcal/mol (mid range)
Probability of being unpaired for the core AUUUA pentamer: 0.25 (short range) / 0.14 (mid range)
[ Highlight | show accessibility plot | show sequence logo | show alignment ]
Site 1731-1735:ATTTA (ATTTA)  
Opening energy for the core AUUUA pentamer: 0.27 kcal/mol (short range) / 0.48 kcal/mol (mid range)
Probability of being unpaired for the core AUUUA pentamer: 0.65 (short range) / 0.46 (mid range)
[ Highlight | show accessibility plot | show sequence logo | show alignment ]

3' UTR sequence

Highlight motifs in 3' UTR sequence: all ATTTA | none

Overview conservation analysis

The tree below summarizes the conservation pattern of the detected ARE motifs. Circles indicate genomic MAF alignments, while boxes are used transcript alignments. Signs in grey indicate that the sequence is present in the alignment, but the correpsonding ARE pattern was not detected.