Welcome to the Structure Conservation Analysis web server. It will help you to detect evolutionarily conserved RNA secondary
structures in multiple sequence alignments. Current limits are 2000 nt and 50 sequences for an alignment.
Simply paste or upload your alignment(s) below and click
Proceed. Accepted alignment formats are CLUSTAL W and FASTA (will be detected automatically). To get more information on the meaning of the options click the
symbols. You can test the server using
this sample alignment.
Or upload a file:
* Recommended methods, that showed good performance in our benchmark.
Use sequences without gaps for tree editing methods (pairwise comparisons only).
Number of random samples:
Notification via e-mail upon complete of the job (optional):