No-frills web-service for the optimisation of expression vectors used in a prokaryotic translation system harboring coding sequences of eukaryotic origin.
Background: Prokaryotic and eukaryotic translation machinery are quite different. Consequently, their mRNA differ in various aspects. Nevertheless, it is common routine to express genes from an eukaryotic, e.g. human, origin in a bacterial system. Therefore, typically the gene is incorporated into an expression vector equipped with bacterial promoters and a 5'utr shown to be efficiently expressed by the prokaryotic translation machinery. Nonetheless, sometimes this constructs fail to produce significant amounts of protein. One possible cause are possible secondar structures formed at the ribosome binding site due to its new sequence context, namely the newly attached downstream coding sequence (cds). The XenoExpressO web-service allows its user to adapt a current expression construct in a way that 5'utr and cds match each other with respect to possible detrimental secondary RNA structures. To this end the cds is modulated without altering the amino acid seqeuence it codes for. The 5'utr itself is unchangd. A detailed description of the applied method can be found in this pre-print.
Usage: Simply type or paste the 5'utr and coding sequence of your expression construct in the appropriate field below and click Proceed. You can test the server using a provided example sequences.